HI I have managed to work around it. So when I have uploaded the project, the e-learning is in the sequence as per the storyline, however when I look as the menu sidebar, the scenes are not in order. I have re ordered the menu bar through the player setting in storyline, menu and scrolled the titles i placed them in order as the scene being shown. This never happened to me before.
As for the trigger- its still showing. From the image you'll see that there's a trigger (red line / arrow that leads to another slide from the same scene), however in the side panel where the triggers are set up, there is no rule for that to happen.